SRGE

SRGE is a Shiny web application that can be used to visualize the syphilis reactor grid and evaluate the impact of user-defined administrative closure algorithms in real time.

Data Set Up

Your dataset must be a .csv file and should include the following fields:

• Case Status
• Age
• Test Result

You may include the following fields for stratifying the reactor grid:

• Gender
• Test Type
• Previous Result

For more details on the requirements and general guidelines for defining and formatting variables please see the following pages:
SRGE Variable Template
Sample reactor Data (right click and "Save Link As.." to save a local copy)

Web Application

A web version of the application is available at https://tavoun.shinyapps.io/SRGE. Please email tavoun@uw.edu if you would like technical assistance to set up a web instance of SRGE.

Local Installation

Requirements

You must have R (3.3.0 or later) and R Studio (0.99.896 or later) installed in order to run SRGE locally.

Install Required Packages

Once you've installed R and R Studio, run the following code in R Studio to install all required packages:

list.of.packages <- c("shiny", "leaflet", "shinyjs", "dplyr", "tidyr", "colorspace", "reshape2", "plotrix", "ggplot2", "devtools")
install.packages(list.of.packages)

devtools::install_github('rstudio/DT')

Download Files from Github Repository

To run SRGE locally, download all of the files in this repository to the same local folder.

Run App

In R Studio, use the following command to run the application:

runApp("C:/Path/to/SRGE/Download/Folder/")